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Peroxisome Research

Tuesday, July 26, 2011

Forthcoming Peroxisome meetings 2011


July 31 – August 2, 2011
Omaha, Nebraska

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In Sex, Life, Development and Disease
August 7-12, 2011
University of New England
Biddeford, ME

8 August 2011, Monday  
9:10 am - 9:40 am                                                                   
Randy Schekman (UC Berkeley, USA)
"Mechanism of Sorting and Traffic of Peroxisomal Proteins from the ER"

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satellite meeting to Plant Biology 2011
August 11, 2011
Hilton Minneapolis, Minneapolis, Minnesota, USA
17 talks, 21 posters and 42 registered researchers..
online registration is available till 11 August 2011 
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FEBS workshop 2011
from algae to higher plants

Primošten, Croatia
31 August - 3 September 2011

Peroxisome related talks -
31 August  - Wednesday

12:00 –12:15
OEF18 is a novel calcium binding protein at peroxisomes and chloroplasts

14:00 –14:15
The PEX11 family: Deciphering a key player of peroxisomal proliferation

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Saturday 10 September, 10:00 to 17:15
Part of the Special Interest symposia during EMBO meeting 2011 Vienna, Austria.
Organisation: Ida van der Klei, Marten Veenhuis
12 talks by European peroxisome researchers.
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6-10 November 2011
Kumamoto, Japan

09 November 2011
09:00 - 09:30
Ralf Erdmann (Ruhr-Univ. Bochum, Germany)
Functional role of the yeast AAA-peroxins Pex1p and Pex6p in peroxisome biogenesis      
09:30 - 10:00
Yukio Fujiki (Kyushu Univ, Japan)
To be announced
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Sunday, July 24, 2011

New player in ER-Peroxisome field


Peroxisomes proliferate by growth and division as well as they can arise de novo from Endoplasmic reticulum. In yeast, it was recently shown that most PMPs transit to peroxisomes via ER. In mammalian cells, Pex16 and Pex3 are known to target peroxisomes via ER. But the key players involved in this ER-peroxisome transport are still poorly known.

The new study published in PNAS identifies Sec16B as factor essential for Pex16 export from ER to peroxisomes. 
Yonekawa et al, Online published before print on 18 july 2011, PNAS

Sec16B(Sec16S) is a vertebrate specific isoform which is less extensively studied than the Sec61A(Sec16L). Comparing the sizes, Sec16B is almost half the size that of Sec16A and these proteins are able to form heteromeric complexes too.

This study found that, overexpression of Sec16B results in reduced number of peroxisomes and ER localization of Pex16 and Pex3. On the other hand, siRNA mediated knockdown of Sec16B results in tubulated peroxisomes, ER localization of pex16 and degradation of Pex3 by Ubiquitin proteasomal system. Authors also characterized different regions of Sec16B and found that C-terminal of Sec16B which differs from Sec16A, is required for its function in peroxisome biogenesis. Peroxisome vesicle formation from ER is known to be independent of COPII vesicle budding. Sec16A as well as Sec16B are involved formation of COPII vesicles and are targeted to ERES(ER Exit Sites). Authors meticulously shown that, stretch of Sec16B  responsible for its recruitment to ERES is not required for its peroxisome related function.

Further reading

PNAS, May 2011

PNAS, December 2011

BBA Mol Cell Research, in press

Sunday, April 17, 2011

New high impact articles - Novel family of stress-protective proteins and pexophagy

A novel family of dehydrin-like proteins is involved in stress response in the human fungal pathogen Aspergillus fumigates
Sak Hoi et al
MBoC in Press, published April 13, 2011
Authors identified two novel proteins DprA and DprB which are important for peroxisome functioning. Both of these proteins when fused to eGFP localize to peroxisomes and cytosol. Dpr mutants exhibit  altered catalase levels and impaired peroxisomal beta-oxidation.

Zutphen et al
Autophagy (Impact Factor - 6.829)
Volume 7, Issue 8   August 2011
Authors identified the massive peroxisome degradation process resembling both micro and macro-pexophagy using Pex3 fused with temperature sensitive degron sequence at N-terminus.

Friday, April 15, 2011

Wednesday, April 13, 2011

Latest peroxisome articles from high impact journal "The Plant Cell"

Two latest articles about plant peroxisomes from journal "The Plant Cell"
Impact Factor - 10.679

Identification of Novel Plant Peroxisomal Targeting Signals by a Combination of Machine Learning Methods and in Vivo Subcellular Targeting Analyses
Lingner T et al.
First Published on April 12, 2011

Arabidopsis ABERRANT PEROXISOME MORPHOLOGY9 Is a Peroxin That Recruits the PEX1-PEX6 Complex to Peroxisomes
Shino Goto et al.
First Published on April 12, 2011


Treat for the eyes

I thought of introducing an additional feature to this research blog by making it semi-informal.
I would extend the blogposts about peroxisomes with suitable interesting and sometimes non-scientific material like pictures suiting the mood of article or useful links, pictures, video etc.

Stunning photography by my friend Rakesh Chandode
"Beauty of plants"
Link to other galleries of eye-catching pics by Rakesh Chandode on National Geogrpahic
http://ngm.nationalgeographic.com/myshot/gallery/150984
http://ngm.nationalgeographic.com/myshot/gallery/251405